SNP Profiles matching ICS 1

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	CT
1._RUQ_847	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
2._ICS_1	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
3._ICS_1	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
4._ICS_1	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
5._ICS_1	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
6._ICS_1	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
7._NA	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
8._NA	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
9._NA	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
10._NA	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
11._NA	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
12._PA_70_[PER]	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
13._GC-04-053-3-17	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
14._ICS_1	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
15._NA	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	AG	CC	TT
16._ICS_1	GG	AT	AA	GT	CC	AA	CG	AG	CT	AT	GG	_	CC	TT
17._MARPER_45	-	AT	-	GT	-	-	-	AG	CT	-	GG	AG	CC	TT
18._MARPER_34	-	AA	-	GT	-	-	-	AG	TT	-	GG	AG	CC	CT
19._MARPER_55	-	AT	-	GG	-	-	-	AA	CC	-	GG	AG	CC	CT
20._RUQ_847	_	_	AA	GT	CC	AA	CG	AG	CT	AT	_	AG	CC	TT
21._RUQ_817	_	_	AA	GT	CC	AA	CG	AG	CT	AT	_	AG	CC	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
1._RUQ_847	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
2._ICS_1	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
3._ICS_1	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
4._ICS_1	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
5._ICS_1	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
6._ICS_1	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
7._NA	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
8._NA	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
9._NA	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
10._NA	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
11._NA	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
12._PA_70_[PER]	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
13._GC-04-053-3-17	TT	CC	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
14._ICS_1	TT	_	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
15._NA	TT	_	AC	TT	GG	GT	CG	CC	TT	GG	AA	TT	AG	TT
16._ICS_1	TT	CC	AC	TT	GG	GT	_	CC	TT	GG	AA	TT	AG	TT
17._MARPER_45	-	CC	-	TT	GG	GT	-	CC	-	GG	AA	TT	AG	-
18._MARPER_34	-	CC	-	CT	GG	GT	-	CC	-	GG	AA	TT	AG	-
19._MARPER_55	-	CC	-	CT	GG	GT	-	CC	-	GG	AA	TT	AG	-
20._RUQ_847	TT	CC	AA	TT	_	GT	CG	CC	_	_	_	_	AG	TT
21._RUQ_817	TT	CC	AA	TT	_	GT	CG	CC	_	_	_	_	AG	TT

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	AA	CT	CT	TT	CC	AA	TT	CT	GG	AG	TT	X_X	X_X
1._RUQ_847	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AG	TT	X_X	X_X
2._ICS_1	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
3._ICS_1	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
4._ICS_1	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
5._ICS_1	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
6._ICS_1	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
7._NA	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
8._NA	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
9._NA	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
10._NA	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
11._NA	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
12._PA_70_[PER]	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
13._GC-04-053-3-17	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
14._ICS_1	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
15._NA	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
16._ICS_1	AA	AA	TT	CT	TT	CC	AA	TT	CT	GG	AA	TT	X_X	X_X
17._MARPER_45	AA	AA	-	CT	-	CC	AA	-	CT	GG	AA	TT	X_X	X_X
18._MARPER_34	AA	AA	-	CT	-	CC	AA	-	TT	GG	AA	TT	X_X	X_X
19._MARPER_55	AA	AA	-	CT	-	CC	AA	-	CT	GG	AA	TT	X_X	X_X
20._RUQ_847	_	_	_	_	TT	_	_	_	CT	GG	AA	_	X_X	X_X
21._RUQ_817	_	_	_	_	TT	_	_	_	CT	GG	AA	_	X_X	X_X

Input profile: ICS_1 RUQ_847

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._ICS_1 RUQ_847

96.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._ICS_1

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 8

Dapeng Zhang, 2016

3._ICS_1

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 6

Dapeng Zhang, 2016

4._ICS_1

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 5

Dapeng Zhang, 2016

5._ICS_1

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 3

Dapeng Zhang, 2016

6._ICS_1

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._ICS_1 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

8._ICS_1 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._ICS_1 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

10._ICS_1 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

11._ICS_1 NA

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

12._PA_70_[PER]

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

13._PA_70_[PER] GC-04-053-3-17

95 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

14._ICS_1

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8903 7

Dapeng Zhang, 2016

15._ICS_1 NA

94.9 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

16._ICS_1

94.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: San Juan Block4

Dapeng Zhang, 2016

17._MARPER_45

94.2 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 251A

Dapeng Zhang, 2014

18._MARPER_34

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 559

Dapeng Zhang, 2014

19._MARPER_55

92.3 %
26 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER C 249

Dapeng Zhang, 2014

20._ICS_1 RUQ_847

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

21._ICS_5 RUQ_817

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520